PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00016861-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 697aa    MW: 80654.9 Da    PI: 8.7419
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00016861-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.14.4e-1634132191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevt 79 
                            kfY++YA+  GF +rks+ +++  +g+i +r + C++eg  +++ ++          +k++r++++ r+gC+ak+  +    g +++ 
  SMil_00016861-RA_Salv  34 KFYKKYARASGFATRKSTINRH-PDGSIRERYMLCNREGVWQKKADEnlkspmsskPKKRKRKTTSCRVGCHAKVIFECAGGGCFRIR 120
                            6*****************9998.8999************9999888889****98777778888999********************* PP

                   FAR1  80 kleleHnHelap 91 
                             +++ H+H+++p
  SMil_00016861-RA_Salv 121 LFNEGHTHKMVP 132
                            *********985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1434132IPR004330FAR1 DNA binding domain
PfamPF105511.2E-27252344IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MDVLDNEELI SPHCDESLRP YVGQIFCTLS QGEKFYKKYA RASGFATRKS TINRHPDGSI  60
RERYMLCNRE GVWQKKADEN LKSPMSSKPK KRKRKTTSCR VGCHAKVIFE CAGGGCFRIR  120
LFNEGHTHKM VPPHSQHLMP SNREVGDLQQ MLIVSGLKAN IGPMRTFRLF REIAGSYEDV  180
GCTSNDFKNF VRDFKLYGAD SNAKMLLEAF TNKQELGDGF KFCYELDEDN KLRRLIWSDK  240
TSIQNFKMFG ECVSFDATYN TNRFKMIFTP FTGRDNHGKC ISFGAAIISG EDMESYSWVL  300
DKFAEIMGQT PRLLITDQDP ALKKAVAASW KETRHRFCMW HITMKVAEKL PKRLGEDPDF  360
KTNFDSIVWS NHDEPEVFEE KWNNMIKDYD LASNKWFSDM FDDRTFWIPA YFRDVPMSSL  420
FRTTSLSESE NSYFKRFISK NSDLVLLYTN YCSAIDSQRH THQKLTLADE TRAPMLIYNL  480
AIEEHASKIY THSVFKKVQD EIRDSLEGCT IRKLFSENED NVYVVRTTLM ASSPNMRIDR  540
IPERYVLKRW CKYNIINPDG ANGLQREERD IFKSPVEFRF LKLVCETVGY VKGDDELTEQ  600
LYSMLVEVKD KFANIRGSET QSKSKERFFS EFYGSTPSES PSILPPDVVK TKGSGPGGRR  660
KSHQEKAMLL AQKPLRLCRR CNTKGHHDSR NCPTKEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994KKRKRK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-68FAR1-related sequence 5